Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Phylogenetic tree and bZIP domain sequence alignment of S. italica ABI5 proteins. The phylogenetic tree was derived using the ML method using MEGA 11 and shows six phylogenetic subfamilies. ( a ) Phylogenetic tree of the relationship between S. sitaria and A. thaliana ABI5 proteins. ( b ) bZIP domain comparison

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques: Sequencing, Derivative Assay, Comparison

Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Phylogenetic relationships, conserved proteins, motif structures, and gene structures of 16 SiABI5 genes from S. italica . ( a ) Phylogenetic tree was constructed based on the full-length sequences of SiABI5 proteins. ( b ) Amino acid motifs in SiABI5 proteins (1–9) represented by colored boxes. ( c ) Exon–intron structure of SiABI5 genes. The green and yellow boxes represent the untranslated region and coding sequence, respectively. The gray lines represent introns

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques: Construct, Sequencing

Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Schematic representation of the chromosomal distribution and synteny blocks of S. italica ABI5 genes. Colored lines indicate all synteny blocks in the S. italica genome, and red lines indicate segmentally duplicated ABI5 gene pairs. The chromosome number is indicated at the bottom of each chromosome

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques:

Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Synteny analysis of ABI5 genes between S. italica and six representative plant species ( Z. mays, O. sativa, S. bicolor, S. lycopersicum, A. thaliana, F. tataricum ). Gray lines in the background indicate the collinear blocks within S. italica and other plant genomes, whereas red lines highlight syntenic ABI5 gene pairs

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques:

Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Phylogenetic relationships and motif compositions of ABI5 proteins from S. italica and three different plant species ( S. bicolor , O. sativa , Z. mays ). Evolutionary relationship between ABI5 proteins and motif composition. Different-colored boxes represent different motifs and their positions in each ABI5 protein sequence. Sequence information for each motif is provided in Table

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques: Sequencing

Journal: BMC Plant Biology

Article Title: Genome-wide identification and expression profiling of the ABI5 gene family in foxtail millet ( Setaria italica )

doi: 10.1186/s12870-024-04865-4

Figure Lengend Snippet: Relative expression patterns (FPKM value) of ABI5 -group genes influencing various tissues and different developmental stages of S. italica . The color bar represents log2 expression levels (FPKM), and red and blue colors indicate high and low gene expression levels, respectively

Article Snippet: The FPKM values of SiABI5 genes in various tissues, including roots, stems, and leaves, were obtained from the Multi-omics Database for S. italica ( http://foxtail-millet.biocloud.net/home ).

Techniques: Expressing, Gene Expression

Journal: Pharmaceuticals

Article Title: Leveraging Single-Cell Multi-Omics to Decode Tumor Microenvironment Diversity and Therapeutic Resistance

doi: 10.3390/ph18010075

Figure Lengend Snippet: Clinical trials employing single-cell multi-omics approach to treat different types of cancer.

Article Snippet: Neuroendocrine Neoplasm Based on Multi-omics Integrated Analysis , NCT04931446 , China , 200 , Neuroendocrine neoplasm , This project analyzed the molecular biological characteristics of NEN based on multi-omics, developing an exclusive NEN multi-omics big data platform, and carrying out molecular subtypes and potential targets predictions to improve the therapeutic effect of neuroendocrine tumors. , [ ] .

Techniques: Clinical Proteomics, Biomarker Discovery, RNA Sequencing, Cell Analysis, Next-Generation Sequencing, Sequencing, Adjuvant, Comparison, Construct